http://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&feed=atom&action=historyEpiModel - Revision history2024-03-29T09:25:51ZRevision history for this page on the wikiMediaWiki 1.15.2http://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=843&oldid=prevHandcock at 07:05, 3 April 20202020-04-03T07:05:02Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=842&oldid=prevHandcock at 06:58, 3 April 20202020-04-03T06:58:31Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next read the lecture notes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next read the lecture notes</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[https://drive.google.com/<del class="diffchange diffchange-inline">file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view</del>?<del class="diffchange diffchange-inline">usp</del>=<del class="diffchange diffchange-inline">sharing </del>202Clecture0 (Part 1)],</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[https://drive.google.com/<ins class="diffchange diffchange-inline">open</ins>?<ins class="diffchange diffchange-inline">id</ins>=<ins class="diffchange diffchange-inline">1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD </ins>202Clecture0 (Part 1)],</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/<del class="diffchange diffchange-inline">file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view</del>?<del class="diffchange diffchange-inline">usp</del>=<del class="diffchange diffchange-inline">sharing </del>202Clecture0 (Part 1)].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/<ins class="diffchange diffchange-inline">open</ins>?<ins class="diffchange diffchange-inline">id</ins>=<ins class="diffchange diffchange-inline">1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD </ins>202Clecture0 (Part 1)].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the lecture notes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the lecture notes</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[https://drive.google.com/<del class="diffchange diffchange-inline">file/d/</del>1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi<del class="diffchange diffchange-inline">/view?usp=sharing </del>202Clecture0 (Part 2)],</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[https://drive.google.com/<ins class="diffchange diffchange-inline">open?id=</ins>1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi <ins class="diffchange diffchange-inline"> </ins>202Clecture0 (Part 2)],</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>which are also adapted notes from</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>which are also adapted notes from</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The next lecture notes cover some possible interventions. To see these work through </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The next lecture notes cover some possible interventions. To see these work through </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[https://drive.google.com/<del class="diffchange diffchange-inline">file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view</del>?<del class="diffchange diffchange-inline">usp</del>=<del class="diffchange diffchange-inline">sharing </del>202Clecture0 (Part 3)] and</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[https://drive.google.com/<ins class="diffchange diffchange-inline">open</ins>?<ins class="diffchange diffchange-inline">id</ins>=<ins class="diffchange diffchange-inline">19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6 </ins>202Clecture0 (Part 3)] and</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[https://drive.google.com/<del class="diffchange diffchange-inline">file/d/</del>1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe<del class="diffchange diffchange-inline">/view?usp=sharing </del>202Clecture0 (Part 4)].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[https://drive.google.com/<ins class="diffchange diffchange-inline">open?id=</ins>1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe 202Clecture0 (Part 4)].</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2><strong> Lecture notes (PDF) </strong></h2></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2><strong> Lecture notes (PDF) </strong></h2></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|[https://drive.google.com/<del class="diffchange diffchange-inline">file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view</del>?<del class="diffchange diffchange-inline">usp</del>=<del class="diffchange diffchange-inline">sharing </del>Lecture 0 (Part 1) (PDF)] </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>|[https://drive.google.com/<ins class="diffchange diffchange-inline">open</ins>?<ins class="diffchange diffchange-inline">id</ins>=<ins class="diffchange diffchange-inline">1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD </ins>Lecture 0 (Part 1) (PDF)] </div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=841&oldid=prevHandcock at 06:43, 3 April 20202020-04-03T06:43:20Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">Finally</del>, work through the lecture notes</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Next</ins>, work through the lecture notes</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>which are also adapted notes from</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>which are also adapted notes from</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The PDF are narrated in the video so you can view the videos after reading the PDF notes.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The PDF are narrated in the video so you can view the videos after reading the PDF notes.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">The next lecture notes cover some possible interventions. To see these work through </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing 202Clecture0 (Part 3)] and</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing 202Clecture0 (Part 4)].</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=840&oldid=prevHandcock at 06:40, 3 April 20202020-04-03T06:40:19Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=<del class="diffchange diffchange-inline">sharing202Clecture0 </del>(Part 1)].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=<ins class="diffchange diffchange-inline">sharing 202Clecture0 </ins>(Part 1)].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=839&oldid=prevHandcock at 06:39, 3 April 20202020-04-03T06:39:57Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/<del class="diffchange diffchange-inline">1Y7jb3_RDv2X4baFmRuRhuQ</del>-<del class="diffchange diffchange-inline">brtqaD1Pi</del>/view?usp=<del class="diffchange diffchange-inline">sharing 202Clecture0 </del>(<del class="diffchange diffchange-inline">Part2</del>)].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/<ins class="diffchange diffchange-inline">1lCrks24hCS</ins>-<ins class="diffchange diffchange-inline">QJ2nzh6qCbcZRHRgbtqow</ins>/view?usp=<ins class="diffchange diffchange-inline">sharing202Clecture0 </ins>(<ins class="diffchange diffchange-inline">Part 1</ins>)].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=838&oldid=prevHandcock at 06:38, 3 April 20202020-04-03T06:38:59Z<p></p>
<table style="background-color: white; color:black;">
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/<del class="diffchange diffchange-inline">1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt</del>/view?usp=sharing 202Clecture0].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/<ins class="diffchange diffchange-inline">1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi</ins>/view?usp=sharing 202Clecture0 <ins class="diffchange diffchange-inline">(Part2)</ins>].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=837&oldid=prevHandcock at 06:37, 3 April 20202020-04-03T06:37:06Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next read the lecture notes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Next read the lecture notes</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">``</del>Modeling the effects of public health interventions on COVID-19 transmission<del class="diffchange diffchange-inline">" </del>which are adapted notes from</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><i></ins>Modeling the effects of public health interventions on COVID-19 transmission<ins class="diffchange diffchange-inline"></i> </ins>which are adapted notes from</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[<del class="diffchange diffchange-inline">\href{]</del>https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches<del class="diffchange diffchange-inline">[</del>].</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt/view?usp=sharing 202Clecture0<del class="diffchange diffchange-inline">}</del>.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt/view?usp=sharing 202Clecture0<ins class="diffchange diffchange-inline">]</ins>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Next, work through the tutorial <del class="diffchange diffchange-inline">\href{</del>http://statnet.org/tut/BasicDCMs.html<del class="diffchange diffchange-inline">}{</del>Basic DCMs with EpiModel<del class="diffchange diffchange-inline">}</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Next, work through the tutorial <ins class="diffchange diffchange-inline">[</ins>http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel<ins class="diffchange diffchange-inline">]</ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>and through the tutorial <del class="diffchange diffchange-inline">\href{</del>http://statnet.org/tut/BasicICMs.html<del class="diffchange diffchange-inline">}{</del>Basic ICMs with EpiModel<del class="diffchange diffchange-inline">}</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>and through the tutorial <ins class="diffchange diffchange-inline">[</ins>http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel<ins class="diffchange diffchange-inline">]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Finally, work through the lecture notes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Finally, work through the lecture notes</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=836&oldid=prevHandcock at 06:33, 3 April 20202020-04-03T06:33:26Z<p></p>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">=== Introduction to COVID-19 Epidemic modeling via EpiModel ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">These notes are a simple introduction to </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">interventions on the epidemic spread.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== Suggested course ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">I suggest you first view the first video.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Next read the lecture notes</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">``Modeling the effects of public health interventions on COVID-19 transmission" which are adapted notes from</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[\href{]https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches[].</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt/view?usp=sharing 202Clecture0}.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Next, work through the tutorial \href{http://statnet.org/tut/BasicDCMs.html}{Basic DCMs with EpiModel}</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">and through the tutorial \href{http://statnet.org/tut/BasicICMs.html}{Basic ICMs with EpiModel}</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Finally, work through the lecture notes</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">which are also adapted notes from</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">The PDF are narrated in the video so you can view the videos after reading the PDF notes.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2><strong> Lecture notes (PDF) </strong></h2></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h2><strong> Lecture notes (PDF) </strong></h2></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{|</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{|</div></td></tr>
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</table>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php?title=EpiModel&diff=835&oldid=prevHandcock: Created page with '<h2><strong> Lecture notes (PDF) </strong></h2> {| |[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] |- |[https://dr…'2020-04-03T06:18:30Z<p>Created page with '<h2><strong> Lecture notes (PDF) </strong></h2> {| |[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] |- |[https://dr…'</p>
<p><b>New page</b></p><div><h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
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<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcock