http://wiki.stat.ucla.edu/hpmrg/index.php?title=Special:Contributions&feed=atom&target=HandcockHPMRG - User contributions [en]2024-03-29T00:35:01ZFrom HPMRGMediaWiki 1.15.2http://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:55:00Z<p>Handcock: </p>
<hr />
<div><!--- {{#externalredirect: https://hpmrg.org/rdsanalyst/}} --><br />
<br />
The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/]</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:54:15Z<p>Handcock: </p>
<hr />
<div>{{#externalredirect: https://hpmrg.org/rdsanalyst/}}<br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:52:47Z<p>Handcock: Redirected page to Https://hpmrg.org/rdsanalyst/</p>
<hr />
<div>#REDIRECT [[https://hpmrg.org/rdsanalyst/]]<br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:47:28Z<p>Handcock: </p>
<hr />
<div>{redirect url={https://hpmrg.org/rdsanalyst}}<br />
<br />
<!--- #REDIRECT [[https://hpmrg.org/rdsanalyst]] --><br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:47:17Z<p>Handcock: </p>
<hr />
<div>{redirect url={https://hpmrg.org/rdsanalyst}<br />
<br />
<!--- #REDIRECT [[https://hpmrg.org/rdsanalyst]] --><br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:45:38Z<p>Handcock: Redirected page to Https://hpmrg.org/rdsanalyst</p>
<hr />
<div>#REDIRECT [[https://hpmrg.org/rdsanalyst]]<br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T19:44:44Z<p>Handcock: </p>
<hr />
<div>REDIRECT [[https://hpmrg.org/rdsanalyst]]<br />
<br />
<!--- The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/] --></div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/Hard-to-Reach_Population_Methods_Research_GroupHard-to-Reach Population Methods Research Group2022-12-21T18:04:53Z<p>Handcock: </p>
<hr />
<div>The <b>Hard-to-Reach Population Methods Research Group</b> (HPMRG) website has been upgraded and moved to [https://hpmrg.org/ https://hpmrg.org]</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/Hard-to-Reach_Population_Methods_Research_GroupHard-to-Reach Population Methods Research Group2022-12-21T18:03:44Z<p>Handcock: Replaced content with 'The <b>The Hard-to-Reach Population Methods Research Group (HPMRG)</b> website has been upgraded and moved to [https://hpmrg.org/ https://hpmrg.org]'</p>
<hr />
<div>The <b>The Hard-to-Reach Population Methods Research Group (HPMRG)</b> website has been upgraded and moved to [https://hpmrg.org/ https://hpmrg.org]</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T18:01:19Z<p>Handcock: </p>
<hr />
<div>The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst https://hpmrg.org/rdsanalyst/]</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-12-21T18:01:09Z<p>Handcock: Replaced content with 'The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst]'</p>
<hr />
<div>The <u>RDS Analyst</u> ('''RDS-A''') software package website has been upgraded and moved to [https://hpmrg.org/rdsanalyst]</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:54:11Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal).<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:53:16Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking [x-man-page://].<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
[x-man-page://]<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:52:44Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking [x-man-page://].<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:49:44Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking [ x-man-page:// here].<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:49:21Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking [x-man-page:// here].<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:48:33Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking [x-man-page:// here].<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:46:54Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal) or clicking <x-man-page://>.<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:35:13Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need the application Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal).<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:34:02Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need a Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal).<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by downloading the installer at: https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg<br />
The file will be an Apple style installer (.pkg) which you will need to open to install gfortran on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2022-02-17T01:31:49Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note on Xcode and gfortran:'''<br />
Some Macs need a Xcode and a version of Fortran to be installed. Xcode is software written by Apple to help people develop software on the Mac, including compiling some R packages from source code. In some cases, <u>RDS Analyst</u> will not run unless it is installed.<br />
<br />
Here are the steps:<br />
<br />
* Install the Xcode application from the Mac App Store<br />
* Open the installed Xcode app, agree to the license, and let it install some "components"<br />
* Open a terminal window by opening the Terminal application (Applications > Utilities > Terminal).<br />
Type <i>xcode-select --install</i> and follow the dialogs that open. This installs some tools for making R packages from source.<br />
* Install gfortran by <br />
Clicking the Download button will take you to the webpage with the version of gfortran for your system.<br />
Download<br />
The file will be an Apple style installer disk image file (.dmg) which you will need to open to install gfortan on your computer.<br />
It should install by default in /usr/local/bin/gfortran.<br />
Troubleshooting:<br />
Do not forget to install Xcode .<br />
Do not forget to install the command line tools.<br />
Periodically Apple updates Xcode. If you see an error compiling, such as "error trying to exec "as": execvp: No such file or directory", you may need to reinstall the Command Line tools.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2021-03-29T20:37:31Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.72.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2021-03-29T20:37:20Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.72.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.71.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/Hard-to-Reach_Population_Methods_Research_GroupHard-to-Reach Population Methods Research Group2021-03-16T16:31:05Z<p>Handcock: </p>
<hr />
<div>The Hard-to-Reach Population Methods Research Group (HPMRG) focuses on developing statistical methodology to help improve understanding of hard-to-reach or otherwise "hidden" populations.[[File:defenseplot5.jpg|300px|right]]<br />
<br />
These populations are characterized by the difficulty in survey sampling from them using standard probability methods. Typically, a sampling frame for the target population is not available, and its members are rare or stigmatized in the larger population so that it is prohibitively expensive to contact them through the available frames. Examples of such populations in a behavioral and social setting include injection drug users, men who have sex with men, and female sex workers. Examples in an economic setting include unregulated workers and the self-employed. Hard-to-reach populations in the US and elsewhere are under-served by current sampling methodologies mainly due to the lack of practical alternatives to address these methodological difficulties.<br />
<br />
The Hard-to-Reach Population Methods Research Group is an collaborative interdisciplinary group of researchers from several universities:<br />
<br />
'''Dr. Krista J. Gile''' is Associate Professor of Statistics in the Department of Mathematics and Statistics at the University of Massachusetts - Amherst. Her research focuses on developing statistical methodology for social and behavioral science research, particularly related to making inference from partially-observed social network structures. Most of her current work is focused on understanding the strengths and limitations of data sampled with link-tracing designs such as snowball sampling, contact tracing, and respondent-driven sampling. In particular, her dissertation and recent work focus on understanding the implications of assumptions of current respondent-driven sampling (RDS) methodology, and on introducing improved estimation strategies for RDS data. For details see [http://www.math.umass.edu/~gile/ her web page].<br />
<br />
'''Dr. Mark S. Handcock''' is Professor of Statistics in the Department of Statistics at the University of California – Los Angeles. His research involves methodological development, and is based largely on motivation from questions in the social and epidemiological sciences. He has published extensively on survey sampling, network inference, and network sampling methods. He recently moved to UCLA from the University of Washington. He teaches [http://www.stat.washington.edu/~handcock/567/ ''Statistical Analysis of Networks''] and [http://www.stat.washington.edu/~handcock/529/ ''Sample Survey Techniques'']. For details see [http://www.stat.ucla.edu/~handcock his web page].<br />
<br />
'''Dr. Lisa G. Johnston''' is an Epidemiologist-Independent Consultant providing technical assistance for over 15 years to international organizations, Universities, and institutions worldwide to conduct surveys and population size estimation techniques among hard-to-reach populations. Most of her work has focused on conducting HIV bio-behavioral surveillance surveys and size estimations using RDS among men who have sex with men, sex workers and people who inject drugs, high risk adolescents and youth and migrants. She has conducted and analyzed data from over 400 RDS surveys in over 40 countries and has published over 45 peer reviewed journal articles about RDS. She has authored several book chapters and developed manuals and guidance on implementing surveys and analyzing data using RDS. For details see [http://www.lisagjohnston.com/ her web page].<br />
<br />
'''Dr. Cori M. Mar''' is the Director of the Statistics Core at the Center for Studies in Demography and Ecology (CSDE) at the University of Washington. Her duties include providing training in statistical methods, data analysis techniques, and statistical programming. Dr. Mar has taught R in a variety of formats from a 2-3 hour one class introduction to one hour a week through a 10 week course. Dr. Mar has extensive experience as a translator between statisticians and the applied researchers. For details see [http://csde.washington.edu/services/statistics.shtml her web page].<br />
<br />
'''Dr. Ian E. Fellows''' is a professional statistician based out of the University of California, Los Angeles. His research interests range over many sub-disciplines of statistics, with his dissertation work focusing on new methods in the analysis of social network sampling designs (such as RDS). He has designed statistical user interfaces for both academic and corporate clients, and in 2011 one of his designs won the prestigious John Chambers Award. He is the primary author of RDS Analyst’s graphical user interface.<br />
<br />
'''Katherine R. McLaughlin''' is Assistant Professor of Statistics in the Department of Statistics at the Oregon State University. She works in many areas of statistics, often with application to social demography and global health. She is an expert in social network analysis, network sampling, survey sampling and social statistics. Her dissertation work focuses on modeling preferential recruitment for RDS and Peer-Driven Interventions. For details see [http://www.science.oregonstate.edu/~mclaugka/ her web page].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T07:05:02Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD 202Clecture0 (Part 1)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Next, work through the lecture notes<br />
[https://drive.google.com/open?id=1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
The next lecture notes cover some possible interventions. To see these work through <br />
[https://drive.google.com/open?id=19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6 202Clecture0 (Part 3)] and<br />
[https://drive.google.com/open?id=1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe 202Clecture0 (Part 4)].<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/open?id=1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/open?id=19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6 Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/open?id=1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:58:31Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD 202Clecture0 (Part 1)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Next, work through the lecture notes<br />
[https://drive.google.com/open?id=1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
The next lecture notes cover some possible interventions. To see these work through <br />
[https://drive.google.com/open?id=19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6 202Clecture0 (Part 3)] and<br />
[https://drive.google.com/open?id=1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe 202Clecture0 (Part 4)].<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=1G7Pf3S5hxnZeqrZb9ZKAxayfoEXPNZvD Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/open?id=1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/open?id=19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6 Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/open?id=1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:43:20Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Next, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
The next lecture notes cover some possible interventions. To see these work through <br />
[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing 202Clecture0 (Part 3)] and<br />
[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing 202Clecture0 (Part 4)].<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:40:19Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Finally, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:39:57Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing202Clecture0 (Part 1)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Finally, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:38:59Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part2)].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Finally, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:37:06Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
<i>Modeling the effects of public health interventions on COVID-19 transmission</i> which are adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt/view?usp=sharing 202Clecture0].<br />
<br />
Next, work through the tutorial [http://statnet.org/tut/BasicDCMs.html Basic DCMs with EpiModel]<br />
and through the tutorial [http://statnet.org/tut/BasicICMs.html Basic ICMs with EpiModel]<br />
<br />
Finally, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:33:26Z<p>Handcock: </p>
<hr />
<div>=== Introduction to COVID-19 Epidemic modeling via EpiModel ===<br />
<br />
These notes are a simple introduction to <br />
<br />
In these notes we develop mathematical and stochastic models of the local epidemic spread of COVID-<br />
19 infection. These stochastic compartmental models are implemented by the <u>EpiModel</u> software package. <u>EpiModel</u> is built on the [http://r-project.org R] statistical language. In these notes we will examine the effect of various public health<br />
interventions on the epidemic spread.<br />
<br />
== Suggested course ==<br />
<br />
I suggest you first view the first video.<br />
<br />
These follow the tutorial [http://statnet.org/nme/d1-s1.pdf Introduction to Network Modeling]. It is a quite an introductory level and so you can work through it quickly, but it get some basic concepts across.<br />
<br />
Next read the lecture notes<br />
[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing 202Clecture0 (Part 1)],<br />
``Modeling the effects of public health interventions on COVID-19 transmission" which are adapted notes from<br />
[\href{]https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches[].<br />
<br />
Next, work through the tutorial [http://statnet.org/nme/d1-s2.pdf Deterministic Compartmental Models]. This is the <u>discrete time</u> version of the SIR model from the lecture notes [https://drive.google.com/file/d/1_X0eH_apuhW0qby2WAxvUEjCDevG1EAt/view?usp=sharing 202Clecture0}.<br />
<br />
Next, work through the tutorial \href{http://statnet.org/tut/BasicDCMs.html}{Basic DCMs with EpiModel}<br />
and through the tutorial \href{http://statnet.org/tut/BasicICMs.html}{Basic ICMs with EpiModel}<br />
<br />
Finally, work through the lecture notes<br />
[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing 202Clecture0 (Part 2)],<br />
which are also adapted notes from<br />
[https://timchurches.github.io/blog/posts/2020-03-10-modelling-the-effects-of-public-health-interventions-on-covid-19-transmission-part-1 work by Tim Churches].<br />
<br />
The PDF are narrated in the video so you can view the videos after reading the PDF notes.<br />
<br />
If you want to run the models yourself, use the Rmarkdown (Rmd) files at the end. They are best run in Rstudio.<br />
<br />
<h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/EpiModelEpiModel2020-04-03T06:18:30Z<p>Handcock: Created page with '<h2><strong> Lecture notes (PDF) </strong></h2> {| |[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] |- |[https://dr…'</p>
<hr />
<div><h2><strong> Lecture notes (PDF) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1lCrks24hCS-QJ2nzh6qCbcZRHRgbtqow/view?usp=sharing Lecture 0 (Part 1) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/1Y7jb3_RDv2X4baFmRuRhuQ-brtqaD1Pi/view?usp=sharing Lecture 0 (Part 2) (PDF)] <br />
|-<br />
|[https://drive.google.com/file/d/19Ju6J1bumUgtGRyMk0gRdJ6K7PJsY9N6/view?usp=sharing Lecture 0 (Part 3) (PDF)]<br />
|-<br />
|[https://drive.google.com/file/d/1Q15tlE7h_rgdBPVHpTY-dSmlRczLDuYe/view?usp=sharing Lecture 0 (Part 4) (PDF)]<br />
|}<br />
<br />
<h2><strong> Videos of Lectures </strong></h2><br />
{|<br />
|[https://drive.google.com/open?id=18J_5Y_UE5sWZX8R-2a2skc28KoWZPrtl Deterministic Compartmental Models (NME d1-s2) (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 1) (mp4)]<br />
|-<br />
|[https://drive.google.com/open?id=1F2Sjkxeepu7z9CpFVjnlbstgLFUhGj0F Deterministic Compartmental Models (NME d1-s2) (Part 2) (mp4)]<br />
|-<br />
|[https://drive.google.com/file/d/1O2L-jg0SgT0jrGErkDvpCHFgrJ2Yus1g/view?usp=sharing Deterministic Compartmental Models (NME d1-s2) (Part 43)(mp4)]<br />
|}<br />
<br />
<h2><strong> Lecture notes (source code as Rmarkdown) </strong></h2><br />
{|<br />
|[https://drive.google.com/file/d/1b6lVN4kZBUJN6-6quRYSdN9_Zt5ZY9kt/view?usp=sharing Lecture 0 (Part 1)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1S2eVQLFVSGei0j2IYCBNDmtdXP_QAC4g/view?usp=sharing Lecture 0 (Part 2)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1hTVfW7Hl90KNrEhPeNK-p1It4aQc4snb/view?usp=sharing Lecture 0 (Part 3)(Rmd)]<br />
|-<br />
|[https://drive.google.com/file/d/1_w0QskKB2Y_CsMWVZ4C3mMoA44S2VB45/view?usp=sharing Lecture 0 (Part 4)(Rmd)]<br />
|}</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2019-12-18T00:15:40Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.71.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.71.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2019-12-18T00:14:41Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.71.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.71.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2019-10-14T00:49:45Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.71.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-16T00:34:08Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
<!--http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-16T00:33:40Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
<!--http://hpmrg.org/software/RDSAnalystSetup.0.7.exe--><br />
http://www.stat.ucla.edu/~handcock/hpmrg/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-14T05:37:58Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-14T05:35:48Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup_0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:16:31Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:16:12Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:15:59Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the installer and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:15:46Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). <br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:15:18Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
The installer is at:<br />
<br />
http://hpmrg.org/software/RDSAnalystInstaller.0.7.dmg<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-10T05:09:41Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u191-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_191 is, in English, Java 8 Update 191".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.66.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-02T22:43:37Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7_181202.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use.<br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it --><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u191-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_191 is, in English, Java 8 Update 191".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.66.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-02T22:42:31Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7_181202.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use. --><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it--><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>. --><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u191-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_191 is, in English, Java 8 Update 191".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.66.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-12-02T22:41:50Z<p>Handcock: /* Installation on an Windows PC */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.7_181202.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is almost 400Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
<br />
This is a new portable version that does not need the Java Runtime Environment to use. --><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:--><br />
<!-- # Launch the <b>Windows Start</b> menu--><br />
<!-- # Click on <b>All Apps</b>--><br />
<!-- # Find the <b>Java</b> program listing--><br />
<!-- # Click <b>About Java</b> to see the Java version --><br />
<!-- If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it--><br />
<br />
<!-- If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>.--><br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u191-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_191 is, in English, Java 8 Update 191".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.66.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-11-18T20:28:52Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.65.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is over 150Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:<br />
# Launch the <b>Windows Start</b> menu<br />
# Click on <b>All Apps</b><br />
# Find the <b>Java</b> program listing<br />
# Click <b>About Java</b> to see the Java version <br />
If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it<br />
<br />
If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>.<br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u191-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_191 is, in English, Java 8 Update 191".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.66.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcockhttp://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_InstallRDS Analyst Install2018-08-19T19:09:32Z<p>Handcock: /* Installation on an Apple Macintosh */</p>
<hr />
<div>=== Introduction ===<br />
<br />
<u>RDS Analyst</u> ('''RDS-A''') is a software package for the analysis of<br />
Respondent-driven sampling (RDS) data that implements recent advances in<br />
statistical methods.<br />
<br />
<u>RDS Analyst</u> has an easy-to-use graphical user interface to the powerful and sophisticated capabilities of the computer package [http://r-project.org R]. <u>RDS Analyst</u> provides a comprehensive framework for working with RDS data, including tools for sample and population estimations, testing, confidence intervals and sensitivity analysis.<br />
<br />
Example capabilities are an easy format for entering data, the visualization of<br />
recruitment chains, regression modeling, and missing data.<br />
<br />
The interface of <u>RDS Analyst</u> is similar to [http://www.spss.com/ SPSS]. <u>RDS Analyst</u> is<br />
also a free, easy to use, alternative to proprietary data analysis software<br />
such as [http://www.spss.com/ SPSS], [http://www.stata.com/ STATA],<br />
[http://www.sas.com/ SAS]/[http://www.jmp.com/ JMP], and<br />
[http://www.minitab.com/ Minitab]. It has a menu system to do common data<br />
manipulation and analysis tasks, and an Excel-like spreadsheet in which to view<br />
and edit data.<br />
<br />
<u>RDS Analyst</u> is meant for users who want to use state-of-the-art techniques for<br />
estimation and quantification of uncertainty from data collected via RDS. It<br />
represents advanced, comprehensive and open-source software to visualize, model<br />
and conduct sensitivity analyzes for RDS data.<br />
<br />
<u>RDS Analyst</u> is an intuitive, cross-platform graphical data analysis system for<br />
the analysis of RDS data. It uses menus and dialogs to guide the user<br />
efficiently through the data manipulation and analysis process, and has an<br />
Excel-like spreadsheet for easy data frame visualization and editing. It is<br />
also the front-end to the very powerful capabilities accessible via the<br />
[http://r-project.org R] command-line interface and also the extensive<br />
capabilities of the [http://r-project.org R] statistical language.<br />
<br />
== Basic facts==<br />
* <u>RDS Analyst</u> is written for the [http://r-project.org R] statistical environment.<br />
* The current development form is for Windows and Macintosh. A LINUX version will be available in installers when it is released publicly.<br />
<br />
== Installation ==<br />
<br />
=== Installation on an Windows PC ===<br />
The installer is at:<br />
<br />
<!--http://neolab.stat.ucla.edu/cranstats/RdsAnalystSetup.0.42.exe --><br />
http://hpmrg.org/software/RDSAnalystSetup.0.65.exe<br />
<br />
Download the install and double-click on it to install the software. <br />
<br />
This can install all programs and utilities needed. If you already have some elements installed you can deselect (or cancel) during the installs. It is recommended that you install this all the first time. This installer is over 150Mb in size and will take time to download.<br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update.<br />
<br />
<!--- After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!--- This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<br />
<!---After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!---><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.62.exe--><br />
<!---><br />
<!--This just installs minor updates for the core packages (that is, anything that has changed since the full install was made). It will typically be a few Mb in size.--><br />
<!----><br />
<!-- You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have java installed at http://javatester.org/version.html--><br />
<!-- If you get the message <i>A JRE has been found. Do you want to install another one anyway?</i>, it means that Java is already installed. In this case, click <i>No</i> so as to not reinstall it.--><br />
You need the Java Runtime Environment to use <u>RDS Analyst</u>. You can check to see if you have the right java installed through the Windows Start menu:<br />
# Launch the <b>Windows Start</b> menu<br />
# Click on <b>All Apps</b><br />
# Find the <b>Java</b> program listing<br />
# Click <b>About Java</b> to see the Java version <br />
If you get a result like [[Media:RDSA_MAC_Java.png|this]], it means that Java is correctly installed.If there is no <b>Java</b> listing or an earlier version number you do not have Java correctly installed. In this case, in the installer click <i>Yes</i> so as to install it<br />
<br />
If you do not have Administrator privileges and the Java Runtime Environment is not installed then you will not be able to run <u>RDS Analyst</u>.<br />
<br />
<br />
'''Note for experienced users:'''<br />
This creates a private version of R for <u>RDS Analyst</u> to use and ensures <u>RDS Analyst</u> has the right version of R available for its use. If you already have R installed separately, the two versions will peacefully coexist and you can use the other version of R just as you were originally.<br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
=== Installation on an Apple Macintosh ===<br />
There is a version for Apple Macintosh computers. They must have Intel CPUs (i.e., be purchased post-2006). To install, please follow the steps below:<br />
<br />
* STEP 1: Download and install R-3.5.1 from here: http://hpmrg.org/software/R-3.5.1.pkg<br />
** This requires Mac OS 10.10 or newer. If you have an older Mac with a Mac OS that has not been updated since mid 2013, then you likely need to update via the Apple Store.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it can be found [http://www.oracle.com/technetwork/java/javase/downloads/jre8-downloads-2133155.html here].--><br />
<!--**Select Java SE Runtime Environment 8uXX, where XX is the latest version (e.g. , Java SE Runtime Environment 8u102)--><br />
<!--**OPTIONAL: You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Java Version: 1.8.0_102 from Oracle Corporation" (or a number greater than 102).--><br />
<!--* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/javaforosx-2017-001.dmg --><br />
<!--**You can check to see if you have Java installed at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.6.0_34 is, in English, Java 6 Update 34".--><br />
* STEP 2: <u>RDS Analyst</u> uses Java to work. It uses the Apple version of Java. PLEASE INSTALL FROM THIS LINK: http://hpmrg.org/software/jdk-8u172-macosx-x64.dmg <br />
**You can check to see if you have Java installed by typing "java -version" in a <u>Terminal</u> window. If you have enabled the browser version of Java (not necessary for RDS Analyst), you can find the version at http://javatester.org/version.html. If you install the above version of Java it should report "Version number translation: 1.8.0_172 is, in English, Java 8 Update 172".<br />
* STEP 3: Download the <u>RDS Analyst</u> Installer: http://hpmrg.org/software/RDSAnalystInstaller.0.65.dmg<br />
** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystInstaller") to install the software.<br />
<!--* <u>RDS Analyst</u> uses Java to work. If you need to install Java, it is at http://hpmrg.org/software/javaforosx.dmg--><br />
<br />
A reboot is not required. You do not need to uninstall any components to update (This includes R and Java). However the <u>RDS Analyst</u> application or the R application must not be running when you update. <br />
<br />
The <u>RDS Analyst</u> application and R will be in your Applications folder. To run <u>RDS Analyst</u>, double-click on it in the Applications folder.<br />
<br />
<b>Tips</b>: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like <u>RDS Analyst</u>, work. So sometimes <u>RDS Analyst</u> will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the <u>Terminal</u> and type in :<br />
<br />
R CMD javareconf<br />
<br />
This asks R to check on the configuration of Java and try to get in sync with it.<br />
<br />
<!--After you install, you <b>should</b> use the updater to keep your installation to the latest version of the packages:--><br />
<!----><br />
<!--* Download the <u>RDS Analyst</u> Updater: http://hpmrg.org/software/RDSAnalystUpdater.0.51.dmg--><br />
<!--** It should mount as a disk-image. Double-click on the installer in it (i.e., "RDSAnalystUpdater") to install the software.--><br />
<!----><br />
<!--This just installs the core packages (that is, anything that has changed since the full install was made). It will typically be 15 Mb in size.--><br />
<!----><br />
<!--Note: To use <u>RDS Analyst</u>, you need Java installed on your Mac. If you are using Mac OS X 10.6 and below, Apple's Java comes pre-installed. If you are using --><br />
<!-- Mac OS X 10.7 (Lion) or Mac OS X 10.8 (Mountain Lion) and above then Java is not pre-installed.--><br />
<!-- To get the latest Java 7 from Oracle, you will need Mac OS X 10.7.3 and above. --><br />
<!-- If you have Java 7, you will see a Java icon under System Preferences.--> <br />
<!-- To install Java version 6, open the "Java Preferences.app" located in the Applications > Utilities folder on your Mac. It will ask if you want to install Java if it is not already there. Accept its invitation.--><br />
<br />
<!-- Here is an installation video (coming). --><br />
<br />
<b>Finally, be sure to sign up for the</b> [[RDS Analyst Users Group]].<br />
<br />
== Getting started - The Manual==<br />
<br />
For the manual, go to [http://www.deducer.org/pmwiki/pmwiki.php?n=Main.RDSAnalyst RDS Analyst Manual]<br />
<br />
== RDS Analyst citation information==<br />
<br />
To cite <u>RDS Analyst</u>, go to [[citation]].</div>Handcock