AP Statistics Curriculum 2007 Distrib Dists
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====<math>k_0</math> Parameter estimation==== | ====<math>k_0</math> Parameter estimation==== | ||
- | We already discussed that for the NMD the MLE estimates of the mean parameters <math>\mu_i</math> are easy to compute. There is no MLE for the <math>k_0</math> parameter | + | We already discussed that for the NMD the MLE estimates of the mean parameters <math>\mu_i</math> are easy to compute. There is no MLE for the <math>k_0</math> parameter; however, there is a protocol for estimating <math>k_0</math> using the [[AP_Statistics_Curriculum_2007_Contingency_Fit |chi-squared goodness of fit statistic]]. In the usual chi-squared statistic: |
: <math>\Chi^2 = \sum_i{\frac{(x_i-\mu_i)^2}{\mu_i}}</math> | : <math>\Chi^2 = \sum_i{\frac{(x_i-\mu_i)^2}{\mu_i}}</math> | ||
- | we can replace denominators by the corresponding negative multinomial variances. Then we get the following test statistic for negative multinomial distributed data: | + | we can replace the expected-means (<math>\mu_i</math>) by sample-means ()<math>\hat{\mu_i}</math> and replace denominators by the corresponding negative multinomial variances. Then we get the following test statistic for negative multinomial distributed data: |
: <math>\Chi^2(k_0) = \sum_{i}{\frac{(x_i-\hat{\mu_i})^2}{\hat{\mu_i} \left (1+ \frac{\hat{\mu_i}}{k_0} \right )}}</math>. | : <math>\Chi^2(k_0) = \sum_{i}{\frac{(x_i-\hat{\mu_i})^2}{\hat{\mu_i} \left (1+ \frac{\hat{\mu_i}}{k_0} \right )}}</math>. | ||
+ | |||
+ | Now we can derive a simple method for estimating the <math>k_0</math> parameter by varying the | ||
+ | values of <math>k_0</math> in the expression <math>\Chi^2(k_0)</math> and matching the values of this statistic with the corresponding asymptotic chi-squared distribution. The following protocol summarizes these steps using the cancer data above: | ||
+ | |||
+ | * ''DF'': The [[AP_Statistics_Curriculum_2007_Contingency_Indep#Calculations |degree of freedom for the Chi-square distribution]] in this case is: | ||
+ | :: df = (# rows – 1)(# columns – 1) = (3-1)*(4-1) = 6 | ||
+ | |||
+ | * ''Median'': The [http://socr.ucla.edu/htmls/dist/ChiSquare_Distribution.html median of a chi-squared random variable with 6 df] is 5.261948. | ||
+ | |||
+ | * ''Mean Counts Estimates'': The mean counts estimates (<math>\mu_i</math>) for the 4 different cancer types are: | ||
+ | :: | ||
+ | |||
+ | * Thus we can solve the equation above <math>\Chi^2(k_0) = 5.261948</math> for the single variable of interest -- the unknown parameter <math>k_0</math>. This solution is an asymptotic chi-squared distribution driven estimate of the parameter <math>k_0</math>. | ||
====SOCR Negative Multinomial Distribution Calculator==== | ====SOCR Negative Multinomial Distribution Calculator==== |
Revision as of 18:36, 6 November 2009
Contents |
General Advance-Placement (AP) Statistics Curriculum - Geometric, HyperGeometric, Negative Binomial Random Variables and Experiments
Geometric
- Definition: The Geometric Distribution is the probability distribution of the number X of Bernoulli trials needed to get one success, supported on the set {1, 2, 3, ...}. The name geometric is a direct derivative from the mathematical notion of geometric series.
- Mass Function: If the probability of successes on each trial is P(success)=p, then the probability that x trials are needed to get one success is , for x = 1, 2, 3, 4,....
- Expectation: The Expected Value of a geometrically distributed random variable X is
- Variance: The Variance is
- Example: See this SOCR Geometric distribution activity.
HyperGeometric
The hypergeometric distribution is a discrete probability distribution that describes the number of successes in a sequence of n draws from a finite population without replacement. An experimental design for using Hypergeometric distribution is illustrated in this table:
Type | Drawn | Not-Drawn | Total |
Defective | k | m-k | m |
Non-Defective | n-k | N+k-n-m | N-m |
Total | n | N-n | N |
- Explanation: Suppose there is a shipment of N objects in which m are defective. The Hypergeometric Distribution describes the probability that in a sample of n distinctive objects drawn from the shipment exactly k objects are defective.
- Mass function: The random variable X follows the Hypergeometric Distribution with parameters N, m and n, then the probability of getting exactly k successes is given by
This formula for the Hypergeometric Mass Function may be interpreted as follows: There are possible samples (without replacement). There are ways to obtain k defective objects and there are ways to fill out the rest of the sample with non-defective objects.
The mean and variance of the hypergeometric distribution have the following closed forms:
- Mean:
- Variance:
Examples
- SOCR Activity: The SOCR Ball and Urn Experiment provides a hands-on demonstration of the utilization of Hypergeometric distribution in practice. This activity consists of selecting n balls at random from an urn with N balls, R of which are red and the other N - R green. The number of red balls Y in the sample is recorded on each update. The distribution and moments of Y are shown in blue in the distribution graph and are recorded in the distribution table. On each update, the empirical density and moments of Y are shown in red in the distribution graph and are recorded in the distribution table. Either of two sampling models can be selected with the list box: with replacement and without replacement. The parameters N, R, and n can be varied with scroll bars.
- A lake contains 1,000 fish; 100 are randomly caught and tagged. Suppose that later we catch 20 fish. Use SOCR Hypergeometric Distribution to:
- Compute the probability mass function of the number of tagged fish in the sample of 20.
- Compute the expected value and the variance of the number of tagged fish in this sample.
- Compute the probability that this random sample contains more than 3 tagged fish.
- Hypergeometric distribution may also be used to estimate the population size: Suppose we are interested in determining the population size. Let N = number of fish in a particular isolated region. Suppose we catch, tag and release back M=200 fish. Several days later, when the fish are randomly mixed with the untagged fish, we take a sample of n=100 and observe m=5 tagged fish. Suppose p=200/N is the population proportion of tagged fish. Notice that when sampling fish we sample without replacement. Thus, hypergeometric is the exact model for this process. Assuming the sample-size (n) is < 5% of the population size(N), we can use binomial approximation to hypergeometric. Thus if the sample of n=100 fish had 5 tagged, the sample-proportion (estimate of the population proportion) will be . Thus, we can estimate that , and , as shown on the figure below.
- You can also see a manual calculation example using the hypergeometric distribution here.
Negative Binomial
The family of Negative Binomial Distributions is a two-parameter family; p and r with 0 < p < 1 and r > 0. There are two (identical) combinatorial interpretations of Negative Binomial processes (X or Y).
X=Trial index (n) of the r^{th} success, or Total # of experiments (n) to get r successes
- Probability Mass Function: , for n = r,r+1,r+2,.... (n=trial number of the r^{th} success)
- Mean:
- Variance:
Y = Number of failures (k) to get r successes
- Probability Mass Function: , for k = 0,1,2,.... (k=number of failures before the r^{th} successes)
- , the probability of k failures and r successes in n=k+r Bernoulli(p) trials with success on the last trial.
- Mean: .
- Variance: .
- Note that X = Y + r, and E(X) = E(Y) + r, whereas VAR(X)=VAR(Y).
SOCR Negative Binomial Experiment
Application
Suppose Jane is promoting and fund-raising for a presidential candidate. She wants to visit all 50 states and she's pledged to get all electoral votes of 6 states before she and the candidate she represents are satisfied. In every state, there is a 30% chance that Jane will be able to secure all electoral votes and 70% chance that she'll fail.
- What's the probability mass function of the number of failures (k=n-r) to get r=6 successes?
- In other words, What's the probability mass function that the last 6^{th} state she succeeds to secure all electoral votes happens to be the at the n^{th} state she campaigns in?
NegBin(r, p) distribution describes the probability of k failures and r successes in n=k+r Bernoulli(p) trials with success on the last trial. Looking to secure the electoral votes for 6 states means Jane needs to get 6 successes before she (and her candidate) is happy. The number of trials (i.e., states visited) needed is n=k+6. The random variable we are interested in is X={number of states visited to achieve 6 successes (secure all electoral votes within these states)}. So, n = k+6, and . Thus, for , the mass function (giving the probabilities that Jane will visit n states before her ultimate success is:
- What's the probability that Jane finishes her campaign in the 10^{th} state?
- Let , then
- What's the probability that Jane finishes campaigning on or before reaching the 8^{th} state?
- Suppose the success of getting all electoral votes within a state is reduced to only 10%, then X~NegBin(r=6, p=0.1). Notice that the shape and domain the Negative-Binomial distribution significantly chance now (see image below)!
- What's the probability that Jane covers all 50 states but fails to get all electoral votes in any 6 states (as she had hoped for)?
- SOCR Activity: If you want to see an interactive Negative-Binomial Graphical calculator you can go to this applet (select Negative Binomial) and see this activity.
Negative Multinomial Distribution (NMD)
The Negative Multinomial Distribution is a generalization of the two-parameter Negative Binomial distribution (NB(r,p)) to outcomes. Suppose we have an experiment that generates possible outcomes, , each occurring with probability , respectively, where with 0 < p_{i} < 1 and . That is, . If the experiment proceeds to generate independent outcomes until occur exactly times, the distribution of the (m+1)-tuple is Negative Multinomial with parameter vector . Contrast this with the combinatorial interpretation of Negative Binomial (special case with m=1):
- X˜NegativeBinomial(NumberOfSuccesses = r,ProbOfSuccess = p),
- X=Total # of experiments (n) to get r successes;
- X˜NegativeMultinomial(k_{0},{p_{0},p_{1}}),
- X=Total # of experiments (n) to get k_{0} and n − k_{0} outcomes of each of the m+1=2 possible outcomes.
Negative Multinomial Summary
- Probability Mass Function: , or equivalently:
- , where Γ(x) is the Gamma function.
- Mean (vector): .
- Variance-Covariance (matrix): , where .
Cancer Example
The Probability Theory Chapter of the EBook shows the following example using 400 Melanoma (skin cancer) Patients where the Type and Site of the cancer are recorded for each subject, as in the Table below.
Type | Site | Totals | ||
Head and Neck | Trunk | Extremities | ||
Hutchinson's melanomic freckle | 22 | 2 | 10 | 34 |
Superficial | 16 | 54 | 115 | 185 |
Nodular | 19 | 33 | 73 | 125 |
Indeterminant | 11 | 17 | 28 | 56 |
Column Totals | 68 | 106 | 226 | 400 |
The sites (locations) of the cancer may be independent, but there may be positive dependencies of the type of cancer for a given location (site). For example, localized exposure to radiation implies that elevated level of one type of cancer (at a given location) may indicate higher level of another cancer type at the same location. We want to use the Negative Multinomial distribution to model the sites cancer rates and try to measure some of the cancer type dependencies within each location.
Let's denote by y_{i,j} the cancer rates for each site () and each type of cancer (). For each (fixed) site (), the cancer rates are independent Negative Multinomial distributed random variables. That is, for each column index (site) the column-vector X
- X = {X_{0},X_{1},X_{2},X_{3}}˜NMD(k_{0},{p_{0},p_{1},p_{2},p_{3}}).
Different columns (sites) are considered to be different instances of the random multinomially distributed X vector. Then we have the following estimates:
- MLE estimate of the Mean: is given by:
- , where
- Example:
- Variance-Covariance: For a single column vector, X = {X_{0},X_{1},X_{2},X_{3}}˜NMD(k_{0},{p_{0},p_{1},p_{2},p_{3}}), covariance between any pair of Negative Multinomial counts (X_{i} and X_{j}) is:
- .
- Example: For the first site (Head and Neck, i=0), suppose that and X˜NMD(k_{0} = 20,{p_{0} = 0.3,p_{1} = 0.2,p_{2} = 0.1,p_{3} = 0.2}). Then:
- NMD(X | k_{0},{p_{0},p_{1},p_{2},p_{3}}) = 1.5395445930162726E − 9
- You can also use the interactive SOCR negative multinomial distribution calculator to compute these quantities, as shown on the figure below.
- There is no MLE estimate for the NMD k_{0} parameter (see this reference). However, there are approximate protocols for estimating the k_{0} parameter, see the example below.
- Correlation: correlation between any pair of Negative Binomial counts (X_{i} and X_{j}) is:
- .
- The marginal distribution of each of the X_{i} variables is negative binomial, as the X_{i} count (considered as success) is measured against all the other outcomes (failure). But jointly, the distribution of is negative multinomial.
Notice that the pair-wise NMD correlations are always positive, where as the correlations between multinomail counts are always negative. Also note that as the parameter k_{0} increases, the paired correlations go to zero! Thus, for large k_{0}, the Negative Multinomial counts X_{i} behave as independent Poisson random variables with respect to their means (μ_{i}).
k_{0} Parameter estimation
We already discussed that for the NMD the MLE estimates of the mean parameters μ_{i} are easy to compute. There is no MLE for the k_{0} parameter; however, there is a protocol for estimating k_{0} using the chi-squared goodness of fit statistic. In the usual chi-squared statistic:
we can replace the expected-means (μ_{i}) by sample-means () and replace denominators by the corresponding negative multinomial variances. Then we get the following test statistic for negative multinomial distributed data:
- .
Now we can derive a simple method for estimating the k_{0} parameter by varying the values of k_{0} in the expression Χ^{2}(k_{0}) and matching the values of this statistic with the corresponding asymptotic chi-squared distribution. The following protocol summarizes these steps using the cancer data above:
- DF: The degree of freedom for the Chi-square distribution in this case is:
- df = (# rows – 1)(# columns – 1) = (3-1)*(4-1) = 6
- Median: The median of a chi-squared random variable with 6 df is 5.261948.
- Mean Counts Estimates: The mean counts estimates (μ_{i}) for the 4 different cancer types are:
- Thus we can solve the equation above Χ^{2}(k_{0}) = 5.261948 for the single variable of interest -- the unknown parameter k_{0}. This solution is an asymptotic chi-squared distribution driven estimate of the parameter k_{0}.
SOCR Negative Multinomial Distribution Calculator
Problems
References
- Negative-Binomial Activity
- Le Gall, F. The modes of a negative multinomial distribution, Statistics & Probability Letters, 2005.
- Johnson et al., 1997 Johnson, N.L., Kotz, S., Balakrishnan, N., 1997. Discrete Multivariate Distributions. Wiley Series in Probability and Mathematical Statistics.
- Kotz and Johnson, 1982 In: S. Kotz and N.L. Johnson, Editors, Encyclopedia of Statistical Sciences, Wiley, New York (1982).
- SOCR Home page: http://www.socr.ucla.edu
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