SOCR EduMaterials AnalysesCommandLineDichotomousProportion
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* All Input files are ASCII (see examples within each of the specific analyses). | * All Input files are ASCII (see examples within each of the specific analyses). | ||
* a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data) | * a '''-h''' flag at the end of the command-line indicates that the first row in all ASCII input data files is a '''HEADER''' row (so it's not interpreted as data) | ||
| - | * Number of variables can be indicated at the end (after '''-h''' flag). If no number of | + | * Number of variables can be indicated at the end (after '''-h''' flag). If no number of variables is included, 1 is set as default. Significance-level (<math>\alpha</math>) is specified last and defaulted to 0.01. |
== Dichotomous ProportionUsage== | == Dichotomous ProportionUsage== | ||
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</code> | </code> | ||
| - | * Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable | + | * Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script. |
<code>#!/bin/csh</code> | <code>#!/bin/csh</code> | ||
<code>date</code> | <code>date</code> | ||
| - | <code>java -cp / | + | <code>java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ |
| - | + | ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h 0.01</code> | |
| - | stat.SOCR.analyses.command.DichotomousProportionCSV / | + | |
| - | + | ||
<code>date</code> | <code>date</code> | ||
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{| class="wikitable" style="text-align:center" border="1" cellpadding="2" | {| class="wikitable" style="text-align:center" border="1" cellpadding="2" | ||
|- | |- | ||
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! d.txt | ! d.txt | ||
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|- | |- | ||
| x | | x | ||
Current revision as of 00:21, 3 December 2008
This page includes the information on how to access the DichotomousProportion library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.
Contents |
Introduction
In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.
General Usage
- Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
- The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
- All Input files are ASCII (see examples within each of the specific analyses).
- a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)
- Number of variables can be indicated at the end (after -h flag). If no number of variables is included, 1 is set as default. Significance-level (α) is specified last and defaulted to 0.01.
Dichotomous ProportionUsage
- Generic Setting:
java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV [data_location]/d.txt -h [number_of_variables] 0.01
- Example: Edit a new file (DichotomousProportionCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.
#!/bin/csh
date
java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/
ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar edu.ucla.stat.SOCR.analyses.command.DichotomousProportionCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/d.txt -h 0.01
date
exit
Example Input data files
One test datafile is included with the SOCR analyses command-line distribution (d.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.
| d.txt |
|---|
| x |
| 0 |
| 1 |
| 0 |
| 1 |
| 1 |
| 1 |
| 0 |
| 0 |
| 0 |
| 0 |
| 1 |
| 0 |
| 1 |
| 0 |
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