# SOCR EduMaterials AnalysesCommandLineKolmogorovSmirnoff

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 Revision as of 17:16, 2 December 2008 (view source)Jenny (Talk | contribs) (New page: This page includes the information on how to access the [http://socr.ucla.edu/htmls/SOCR_Analyses.html KolmogorovSmirnoff] library via shell-based command-line interface on local machines....)← Older edit Current revision as of 00:33, 3 December 2008 (view source)IvoDinov (Talk | contribs) m (One intermediate revision not shown) Line 11: Line 11: - ==Fliger-Killeen Usage== + == Kolmogorov-Smirnoff Usage== * Generic Setting: * Generic Setting: - java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/FK.txt -h + java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/KS.txt -h - * Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permisions). Some operating systems/platforms may require variants of this (C-shell) script. + * Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script. #!/bin/csh #!/bin/csh date date - java -cp /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ + java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ - cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/ + ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/ - cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /cxfs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h + ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h date date

## Current revision as of 00:33, 3 December 2008

This page includes the information on how to access the KolmogorovSmirnoff library via shell-based command-line interface on local machines. More information about other SOCR Analyses command-line interfaces is available here.

## Introduction

In addition to the graphical user interfaces, via a web-browser, all SOCR Analyses allow command-line shell execution on local systems.

## General Usage

• Get the latest SOCR JAR files from the SOCR page (http://socr.ucla.edu/htmls/jars/).
• The command-line interface to SOCR Analyses generally uses EXAMPLE 1 from the list of example data files for the corresponding analysis.
• All Input files are ASCII (see examples within each of the specific analyses).
• a -h flag at the end of the command-line indicates that the first row in all ASCII input data files is a HEADER row (so it's not interpreted as data)

## Kolmogorov-Smirnoff Usage

• Generic Setting:

 java -cp [SOCRjar_location]/SOCR_core.jar:[SOCRjar_location]/SOCR_plugin.jar:/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV [data_location]/KS.txt -h 

• Example: Edit a new file (KolmogorovSmirnoffCSV.csh) using any editor and paste this inside (make sure the file has executable permissions). Some operating systems/platforms may require variants of this (C-shell) script.

#!/bin/csh

date

java -cp /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_core.jar:/ ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/SOCR_plugin.jar:/ ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/bin/jfreechart-1.0.5.jar edu.ucla.stat.SOCR.analyses.command.KolmogorovSmirnoffCSV /ifs/ccb/CCB_SW_Tools/others/Statistics/SOCR_Statistics/SOCR_CSV_test_Scripts_Data/KS.txt -h

date

exit

## Example Input data files

One test datafile is included with the SOCR analyses command-line distribution (KS.txt). The ASCII content of each of these is included below. Note that the first lines in these files are column headers. This requires the "-h" flag at the end of the command line execution so that these first lines are interpreted as column headers.

 KS.txt A B 0.08 0.11 0.1 0.18 0.15 0.23 0.17 0.51 0.24 1.19 0.34 1.3 0.38 1.32 0.42 1.73 0.49 2.06 0.5 2.16 0.7 2.37 0.94 2.91 0.95 4.5 1.26 4.51 1.37 4.66 1.55 14.68 1.75 14.82 3.2 27.44 6.98 39.41 50.57 41.04

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